PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G059851_P01
Common NameZm.22633
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 508aa    MW: 56061.7 Da    PI: 4.7317
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G059851_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34761682103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y+++++++l+ +isw + gnsfvv+d+++fa++vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k+l
  GRMZM2G059851_P01  76 FLSKTYDLVNEPALDGVISWGAAGNSFVVWDPSTFARDVLPHNFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRDSKHL 158
                        9****************************************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i r++s+
  GRMZM2G059851_P01 159 LKRIVRRRSS 168
                        ******9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-3772165IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.6E-3472165IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-5572165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-167699IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.8E-3176165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-16114126IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340115139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-16127139IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MHRARPTAHA NDPDAPYAAA VAMLLEPKLE DEELPLQQLA SPGPFVSLDQ LMPAVAVPAE  60
PRPLEALLQG PQLPPFLSKT YDLVNEPALD GVISWGAAGN SFVVWDPSTF ARDVLPHNFK  120
HNNFSSFVRQ LNTYGFRKVH ADRWEFAHED FLRDSKHLLK RIVRRRSSPT KQSSVQPGSS  180
SGESSLDPEL HTLRREKNAL LEEVARLKQE HRQTIEQMST LNHRLESAED RQRQMVSFLA  240
KLLQNPSFVR KLKLHREKKE IDSTRVKRKF LKHVPHGSVE SGESSSQHAG ENGSYFAVSS  300
PMATTTSVHD DITELQNFLL EDDDLNFGMD SENTGLEGTE ATDDIGELIQ GFDTQEELDL  360
GSGAELQEMP PASGPLARDP TIGRFKGKNV LCPGLDATSS EGDCLSPLPD NMGLLSGTML  420
GTAGSMMAAD DEQIWGVDAS AALQSSCSGT SQQAFGSHAS DPYLMDIANR PERFWELDFQ  480
ALDEADLQLD KCAIDDPALQ QQPSMKKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-246816811123Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.226330.0embryo
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G059851
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G059851_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9571670.0EU957167.1 Zea mays clone 1584568 heat shock factor protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147968.10.0heat shock factor protein 2
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLB6SWQ20.0B6SWQ2_MAIZE; Heat shock factor protein 2
STRINGGRMZM2G059851_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Representative plantOGRP10024911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.16e-70heat shock transcription factor A3
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]